Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0311
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    31   0.86 
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    30   1.5  
06_03_1323 + 29313574-29314109,29314428-29315198,29315277-293153...    30   2.0  
04_04_1460 + 33764106-33764303,33764675-33766201                       30   2.0  
10_08_1057 + 22594419-22594466,22594710-22594776,22595053-225952...    29   3.5  
12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646           28   6.1  
10_01_0052 - 750902-751697,753077-753603,753696-753913,754012-75...    28   6.1  
10_01_0051 - 741031-741820,742998-743530,743616-743833,743941-74...    28   6.1  
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    28   8.0  

>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 50  PKNQTIIN--KKWSACNLVHVTEVKLLLRYVVLW--FS*FFIVKSR 175
           P ++T I     WS C +  V E+K+LLR    W  F  FF V  +
Sbjct: 313 PSDETCIKPMSSWSLCTVTQVEELKMLLRMFPTWASFVIFFAVNGQ 358


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  KWSACNLVHVTEVKLLLRYVVLWFS 151
           +W  C +  V EVK+LLR + +W +
Sbjct: 370 RWRLCTVSQVEEVKILLRLIPIWLT 394


>06_03_1323 +
           29313574-29314109,29314428-29315198,29315277-29315328,
           29318373-29318909
          Length = 631

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 80  WSACNLVHVTEVKLLLRYVVLWFS 151
           W  C+L  V E+K+L+R + LW S
Sbjct: 199 WRLCSLTQVEELKILVRMLPLWAS 222


>04_04_1460 + 33764106-33764303,33764675-33766201
          Length = 574

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 74  KKWSACNLVHVTEVKLLLRYVVLWFS 151
           + WS C++  V EVK L++ V +W S
Sbjct: 305 RPWSLCSVQQVEEVKCLVKIVPVWIS 330


>10_08_1057 +
           22594419-22594466,22594710-22594776,22595053-22595270,
           22595425-22595981,22596398-22597217
          Length = 569

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 80  WSACNLVHVTEVKLLLRYVVLW 145
           W  C++  V EVK+LLR + +W
Sbjct: 322 WLQCSVTQVEEVKILLRMLPIW 343


>12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646
          Length = 477

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 74  KKWSACNLVHVTEVKLLLRYVVLWFS 151
           ++WSAC +  V E K++LR + ++ +
Sbjct: 205 RRWSACTVTQVEEAKIILRMLPVFLT 230


>10_01_0052 -
           750902-751697,753077-753603,753696-753913,754012-754114,
           754337-754393
          Length = 566

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 80  WSACNLVHVTEVKLLLRYVVLWFS--*FFIVKSR 175
           W  C +  V E+K+LLR   +W S   FF+V ++
Sbjct: 322 WRLCTVSQVEELKILLRMFPVWVSMVVFFVVTAQ 355


>10_01_0051 -
           741031-741820,742998-743530,743616-743833,743941-744043,
           744239-744318,744719-744725
          Length = 576

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 56  NQTIINKKWSACNLVHVTEVKLLLRYVVLWFS--*FFIVKSR 175
           N  +    W  C +  V E+K+LLR   +W S   FF+V ++
Sbjct: 328 NSPVQPDPWRLCTVSQVEELKMLLRVFPVWASLLVFFVVTAQ 369


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 77  KWSACNLVHVTEVKLLLRYVVLW 145
           +W  C +  V EVK+L+R   +W
Sbjct: 332 RWRQCTVTQVEEVKMLVRMCPIW 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,202,423
Number of Sequences: 37544
Number of extensions: 267681
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)