Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0311
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)                    28   6.2  
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 603  KYCLLLNVNPSPC-HHSKLSETNQLILSYIKTHRVGRQKLEKSV 475
            +YCLL N   SPC +   L++  Q  +++I    + RQ L++++
Sbjct: 1766 QYCLLWNSALSPCVYVIFLADFKQAFMTFIACRSLTRQSLQETI 1809


>SB_30484| Best HMM Match : Ded_cyto (HMM E-Value=0)
          Length = 1025

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 561 HSKLSETNQLILSYIKTHRVGRQKLEKSV 475
           HSK+SE  + I+  ++ HR+G   L   V
Sbjct: 140 HSKISEAFKKIIQTVRAHRIGGDSLSPKV 168


>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 207 FSYT*HSLLQGLDLTMKN*ENHNTTYRKRSFTSVTCTKL 91
           FSY  H++  G++ +MK+ EN+N         S T   L
Sbjct: 298 FSYCAHAVFPGIEASMKHPENYNKMMHTSFLVSATVKTL 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,127,579
Number of Sequences: 59808
Number of extensions: 331159
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)