Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0310
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.92 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   6.5  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 38  MPFARYVEPGRVALVSRRSLKGKVSER-GRRY*PNS 142
           MP+ R+    R+ +  RRSL G   +  G+ Y P+S
Sbjct: 79  MPYPRFPPYDRMDIRDRRSLHGPQQQMDGQEYRPDS 114


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 191 LKPTPSHKIPPQIRVHSP 244
           ++P P H  PP  ++H P
Sbjct: 28  VQPLPRHFNPPSDKLHHP 45


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 38  MPFARYVEPGRVALVSRRSLKGKVSER 118
           M +A+ ++PG   LVS  +    +SE+
Sbjct: 191 MKYAQKLQPGDFLLVSDNAKNALISEK 217


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 445 CWYLRQEKYP*SGCEKSAHQEGDQKTQLR 531
           C Y R +K    G ++ A QE  Q+T+ R
Sbjct: 138 CQYCRYQKCLNMGMKREAVQEERQRTKDR 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,209
Number of Sequences: 336
Number of extensions: 2891
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)