Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0310
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 51 2e-07
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 31 0.14
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 0.98
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 1.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.2
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 25 6.9
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 25 9.1
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 25 9.1
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 25 9.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 9.1
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 50.8 bits (116), Expect = 2e-07
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Frame = +2
Query: 44 FARYVEPGRVALVSRRSLKGKVS------ERGRRY*PNSCTG*WTRQWST*ATDPLKPTP 205
F RYVE GRV LV++ GK++ + R + C+ + RQ + L
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSE-FPRQVIRYGSVVLTHIV 62
Query: 206 SHKIPPQIRVHSPYSSLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAA 382
K+P R + K W + KW S WA+KL K+ R+Q+ D+DRF +
Sbjct: 63 M-KLPRGARS----GIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLK 117
Query: 383 RVKRNRARTAVFKSLK 430
+ +R + AV K+LK
Sbjct: 118 KQRREQVNVAVAKALK 133
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/46 (45%), Positives = 27/46 (58%)
Frame = +3
Query: 90 GPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLK 227
G GKL +VD++D RAL+D P S PRQ IR + LT +K
Sbjct: 19 GEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMK 64
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 233 VHSPYSSLRKAWTDAKLNEKWTESQWA 313
VH PY+SL +A+ D +N+K E W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 358 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 260
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 496 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 350
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +2
Query: 260 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 439
+A + + E+ E++ +KLA +EKR + + K R+++ RA+ A K + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765
Query: 440 ARA 448
A A
Sbjct: 766 AHA 768
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 298 CPFFIEFSICPRFPQRRVGAVNAYLRRNFVRWS 200
C F I + + PQ + N Y R ++R+S
Sbjct: 48 CNFIINVGLRLKLPQTALATANIYFHRFYLRFS 80
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 604 KVILYSLLKICLSHITCRRHKNNYFLAGFFGRLLGAHFFRSRFRD 470
K I L+++ LSH C + F +GFFG A +F D
Sbjct: 176 KAIKQKLVELELSHKVCVISYSAKFASGFFGPFRAAANGAPKFGD 220
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 595 LYSLLKICLSHI--TCRRHKNNYFLAGFFGRLLGAHFFRSRFR 473
LY+LL + ++ + T R + +YFL F R G + SR+R
Sbjct: 78 LYTLLGLIVNILRNTETRKRYDYFLKNGFPRWKGTGYLYSRYR 120
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -1
Query: 266 TLSSKTSRGCERVFEAEFC 210
T ++KTS C+ +++ +FC
Sbjct: 279 TFTTKTSPACQLIYDLQFC 297
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 148 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 249
++ D AV Y N+ NS++ ++A N S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,172
Number of Sequences: 5004
Number of extensions: 46336
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -