Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0310
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    54   1e-07
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    49   4e-06
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   1.0  
03_05_0161 + 21400580-21401695                                         30   1.8  
07_03_1029 + 23379890-23380139,23380506-23381131                       28   5.4  
04_04_0387 + 24869594-24871480                                         27   9.4  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +2

Query: 248 SSLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSL 427
           ++L KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       L
Sbjct: 69  TTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKL 128

Query: 428 KVKAA 442
           K  AA
Sbjct: 129 KKTAA 133



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +3

Query: 102 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 224
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++
Sbjct: 22  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 60


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 19/48 (39%), Positives = 32/48 (66%)
 Frame = +2

Query: 248 SSLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 391
           ++L KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 82  TTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +3

Query: 102 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 224
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++
Sbjct: 35  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKI 73


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 522 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 343
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 202 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 107
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>07_03_1029 + 23379890-23380139,23380506-23381131
          Length = 291

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 69  VSPWSADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQI 188
           +S WS      G +V   +        VD PG  VPR+ I
Sbjct: 235 MSTWSVASTAGGSVVVAAESSSSENRRVDSPGGAVPRKSI 274


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 284 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 463
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 464 K 466
           K
Sbjct: 557 K 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,392
Number of Sequences: 37544
Number of extensions: 325031
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)