Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0310
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)             29   3.2  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        29   4.2  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             28   5.5  
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)                28   5.5  
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)               28   5.5  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/62 (43%), Positives = 43/62 (69%)
 Frame = +2

Query: 254 LRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 433
           ++KA+  A++ +KW ++ WA+KLA ++KRA + D+DRFKL  A+ K+NR      K LK 
Sbjct: 281 VKKAFEAAQVQDKWEQTAWARKLAMRKKRATLNDFDRFKLKLAKQKKNRLLRTEVKKLKK 340

Query: 434 KA 439
           +A
Sbjct: 341 EA 342


>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 298 CPFFIEFSICPRFPQRRVGAVNAYLRRNFVRWSWFKRI 185
           C FF+   +CPR P+R  G ++    R+F    ++K I
Sbjct: 507 CSFFLARYLCPRSPRRGWGELSLTTMRHFRCQRYYKNI 544


>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 232 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 104
           AY+ R++  WS+ K  C +  P+   S S  + +IT  TL  +
Sbjct: 87  AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 202  SISQNSASNTRSQPLLVFEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVN 375
            S+ ++S     S+     EE  D    + K+D K    +V++ RE   ND+L  + VN
Sbjct: 1680 SVLESSGGTMNSEESFFLEE--DNAILKRKLDEKETALKVTQDREREMNDKLMALYVN 1735


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 169 PLPGPSTSARVWSITSTTLTNFPFK--GPSADQGDTPWFYVPCKR 41
           P   PS  +RV   T+  ++  P+   GPS  +GDTP+   P  R
Sbjct: 827 PPEEPSNKSRVIDRTTVPMSRPPYDVVGPSPVRGDTPYDTSPLSR 871


>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 256 QRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 155
           ++RV   +AY   N + W W++R+   G  + GP
Sbjct: 121 RKRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 256 QRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 155
           ++RV   +AY   N + W W++R+   G  + GP
Sbjct: 121 RKRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,115
Number of Sequences: 59808
Number of extensions: 387118
Number of successful extensions: 1083
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)