Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0310
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 55 4e-08
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 33 0.17
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 33 0.17
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 32 0.30
U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 31 0.52
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 30 1.2
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu... 28 4.9
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 28 6.4
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.4
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 27 8.5
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 27 8.5
AF016673-4|AAB66125.2| 743|Caenorhabditis elegans Hypothetical ... 27 8.5
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 55.2 bits (127), Expect = 4e-08
Identities = 38/131 (29%), Positives = 62/131 (47%)
Frame = +2
Query: 38 MPFARYVEPGRVALVSRRSLKGKVSERGRRY*PNSCTG*WTRQWST*ATDPLKPTPSHKI 217
M F R V+ GRV ++ +GK++ N T LK K
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 218 PPQIRVHSPYSSLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 397
++RV ++ A+ AK+ E + ++QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 398 RARTAVFKSLK 430
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 275 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 454
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 455 FGKKNIP 475
KK+ P
Sbjct: 186 -AKKSAP 191
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 275 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGT 454
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 455 FGKKNIP 475
KK+ P
Sbjct: 186 -AKKSAP 191
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 299 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 445
E+QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 11 protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 391 EEPCQDCRIQELEGEGCACWYLRQEKYP*--SGCEKSAHQEGDQKTQLRSNCFCVCDRLC 564
++ C + Q+ GCA Y +Q+ P S CE+S + Q +S+C C C
Sbjct: 56 QQSCSCAQAQQPSSCGCAQQYQQQQCAPTCQSSCEQSCVAQQQPIAQCQSSCSSTCQSAC 115
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 238 QPLLVFEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 417
+P+L D C + K + +++ Q+E TN L+ V T + C DCR
Sbjct: 85 KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144
Query: 418 QELEGEGCACWYLRQ 462
E + AC +RQ
Sbjct: 145 AEAKDFWRACVQVRQ 159
>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
protein 1 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 475 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 362
RDI LA TS RS HL + + +PGT L S + L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 3/136 (2%)
Frame = +2
Query: 197 PTPSHKIPPQIRVHSP--YSSLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 370
P PS K + R H P + +L W + + EK + +K+ + + ++++ K
Sbjct: 126 PKPSEKELEERREHIPSHFRALHPEWIEEENKEKPPDDTGTRKVVKSAEEREQDEFNKLK 185
Query: 371 -LTAARVKRNRARTAVFKSLKVKAARAGTFGKKNIPXXXXXXXXXXXXXXXPS*EVIVFV 547
+ R N + + + A + KK P+ E + FV
Sbjct: 186 RINTYRRNENPEVQQAREEKERREAEEAAYAKKRNHERFKKGITALPGSTLPNFEDMNFV 245
Query: 548 SATGYVTKTDFKKRIK 595
TG+ + KR++
Sbjct: 246 E-TGFFKDFEENKRLE 260
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 284 NEKWTESQWAQKLANKEKRAQMTDYDRFK 370
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 126 RLPRSLTFPLRDRRLTRATRPGST 55
RLP S TFP RL RA P T
Sbjct: 364 RLPNSATFPTEKSRLPRAPPPAVT 387
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 126 RLPRSLTFPLRDRRLTRATRPGST 55
RLP S TFP RL RA P T
Sbjct: 364 RLPNSATFPTEKSRLPRAPPPAVT 387
>AF016673-4|AAB66125.2| 743|Caenorhabditis elegans Hypothetical
protein T06D4.3 protein.
Length = 743
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 163 PGPSTSARVWSITSTTLTNFPFKGPSADQGDTP 65
P P T++R ++T++TL N + PS DTP
Sbjct: 58 PAPVTTSRPPNLTTSTLPNSSSRPPSIPICDTP 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,923
Number of Sequences: 27780
Number of extensions: 274439
Number of successful extensions: 771
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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