Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0310
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            48   7e-06
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    47   9e-06
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    30   1.1  
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    29   2.0  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa...    28   4.5  
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi...    28   6.0  
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ...    27   7.9  
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    27   7.9  
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ...    27   7.9  

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +2

Query: 254 LRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 394
           L +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 71  LIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/37 (56%), Positives = 26/37 (70%)
 Frame = +3

Query: 102 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 212
           GKLV +VDV+DQ RALVD P   + R Q+ L +L LT
Sbjct: 22  GKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +2

Query: 251 SLRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 394
           +L +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 70  ALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +3

Query: 102 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 212
           GKLV +VDV+DQ RALVD P   + R Q+   +L LT
Sbjct: 22  GKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 182 TDPLKPTPSHKIPPQIR-VHSPYSSLRKAWTDAKLNEKWTESQWAQK 319
           T PLKP+ SH+  P+ + +  P + L+  W    +  KWT+ Q  ++
Sbjct: 613 TRPLKPSCSHRDRPECKNMIDPTTPLKVIWA---MGAKWTDGQLTER 656


>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 188 PLKPTPSHKIPPQ-IRVHSPYSSLRKAWTDAKLNE--KWTESQWAQKLANKEKRAQMTDY 358
           P +  PS   P   + +  PYSS++K W   K     KW    ++ KL N    +   + 
Sbjct: 667 PWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNL 726

Query: 359 DRFKL 373
           +R  L
Sbjct: 727 ERLNL 731


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 188 PLKPTPSHKIPPQ-IRVHSPYSSLRKAWTDAKLNEK--WTESQWAQKLANKEKRAQMTDY 358
           P    P   IP   + +  PYS +R+ W + K   K  W +   + KL N    +Q  + 
Sbjct: 631 PKDELPQDFIPKNLVDLKLPYSKIRQIWREEKDAPKLRWVDLNHSSKLENLSGLSQALNL 690

Query: 359 DRFKL 373
           +R  L
Sbjct: 691 ERLNL 695


>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 663

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 421 ELEGEGCACWYLRQEKYP*SGCEKSAHQEGDQKTQLRS 534
           E EG+GC     + +  P    E +AH E D + +LRS
Sbjct: 480 EREGKGCLVVVNKWDTIPNKNQETAAHYEDDVREKLRS 517


>At1g47710.1 68414.m05302 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 391

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 108 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRL*G 260
           L  ++D I  T   +D   + +PR+Q+++ +  + KF+  + F A   L G
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDASNVLKG 294


>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
           similar to pathogenesis-related protein 1 {Arabidopsis
           thaliana} GI:166805;  contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 177

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 158 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSLRKAWTDAKLNEKWTESQWAQKLANKEK 337
           TR +      P+K     K    ++VH+    +R A   A L    T + +AQK AN++ 
Sbjct: 19  TRAYGLPRVRPIKDVQPRKT---LKVHN---QIRAAVGVAPLKWNKTVAAYAQKFANRQA 72

Query: 338 RAQMTDYDRFK 370
           +A + DY   +
Sbjct: 73  KAGVCDYSSMR 83


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 188 PLKPTPSHKIPPQ-IRVHSPYSSLRKAWTDAK 280
           PL+  P H  P   + ++ PYS L+K W   K
Sbjct: 425 PLQSLPQHFDPTHLVELNMPYSKLQKLWGGTK 456


>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
           contains weak similarity to Swiss-Prot:P10366 ATP
           phosphoribosyltransferase [Escherichia coli]
          Length = 1402

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 521 PS*EVIVFVSATGYVTKTDFKKRIKNYFLAS 613
           P  E  VFV+AT  V   DF+ RI++ F+ S
Sbjct: 427 PYIEEPVFVAATSNVMSLDFRPRIRHDFILS 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,212,444
Number of Sequences: 28952
Number of extensions: 251375
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)