Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0309
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0132 + 16469922-16470145,16472720-16472793,16473613-164737...    28   6.1  

>01_04_0132 +
           16469922-16470145,16472720-16472793,16473613-16473755,
           16474076-16474187,16475235-16475350,16475448-16475594
          Length = 271

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 678 HKTSLPPVKYPNLHIISFSNYYN*HL*FHYRLHWTL 571
           H  ++P    PN+H+  FS   +    FH R++ TL
Sbjct: 194 HHLAVPSCVMPNIHVYGFSKAEDPEYDFHERINLTL 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,332
Number of Sequences: 37544
Number of extensions: 173245
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)