Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0309
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  

>SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = +2

Query: 116 SHSMASCFMLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKI----LPYAPKEVSLQK 283
           SHS+     +RS C+ L+    + L      S+ Y+R V SV +    L Y P +  +  
Sbjct: 217 SHSLPYIRTVRSVCVALASLQYVPLDRSVSHSLPYIRTVRSVCVALASLQYVPLDRCVAL 276

Query: 284 TVKKHIHLHNRRSYR*KRSLPDIRLIYRKNCKI*KYSRYV 403
              +++ L    S+    SLP IR + R  C    + +YV
Sbjct: 277 ASLQYVPLDRSVSH----SLPYIRTV-RSVCVALAFLQYV 311



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 116 SHSMASCFMLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPYAPKEVSLQKTV 289
           SHS+     +RS C+ L+    + L      S+ Y+R V SV +   + + V L ++V
Sbjct: 159 SHSLPYIRTVRSVCVALASLQYVPLDRSVSHSLPYIRTVRSVCVALASLQYVPLDRSV 216



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 116 SHSMASCFMLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPYAPKEVSLQKTV 289
           SHS+     +RS C+ L+    + L      S+ Y+R V SV +   + + V L ++V
Sbjct: 188 SHSLPYIRTVRSVCVALASLQYVPLDRSVSHSLPYIRTVRSVCVALASLQYVPLDRSV 245



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 116 SHSMASCFMLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPYAPKEVSLQKTVKK 295
           SHS+     +RS C  L+    + L      S+ Y+R V SV++   + + V L ++V  
Sbjct: 484 SHSLPYIRTVRSLCDALAFLQYVPLDRSVSHSLPYIRTVRSVRVALASLQYVPLDRSVSH 543

Query: 296 HI-HLHNRRSYR*KRSLPDIRLI 361
            + ++   RS      LP +R++
Sbjct: 544 SLPYIRTVRSLCVAVGLPLLRVL 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,553,124
Number of Sequences: 59808
Number of extensions: 223972
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)