Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0309
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26798.1 68414.m03264 Expressed protein                             31   0.55 
At4g23540.1 68417.m03392 expressed protein probable membrane pro...    27   8.9  

>At1g26798.1 68414.m03264 Expressed protein
          Length = 151

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 173 SVSIALSLFFDTSVAYLRDVTSVKI-LPYAPKEVSLQKTVKKHIHL 307
           SV I   + F TS+A+  + TSV + LP+APK V +  T+  H  L
Sbjct: 11  SVLITTLVIFKTSLAF-ENYTSVDVDLPFAPKHVIIINTLNPHERL 55


>At4g23540.1 68417.m03392 expressed protein probable membrane
           protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
          Length = 675

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
 Frame = +3

Query: 255 TRLKK-FHFKKQSKSTYICTIGGLIAKSDLFQT-----SV*FTEKTVKYKNTAGMLRCTI 416
           T L++ FH+ K++ +  +  +    + ++L QT     +V  TE +  +K   G L  T+
Sbjct: 173 TELERGFHYSKKASTKNMKALAS--SSTELLQTLVDVFTVSGTEISADFKAAIGCLASTL 230

Query: 417 DNTLLYKIYTYIINK 461
           D+++  KI   ++NK
Sbjct: 231 DSSVRKKILISLLNK 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,019
Number of Sequences: 28952
Number of extensions: 151461
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)