Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0308
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q58791 Cluster: Uncharacterized protein MJ1396; n=1; Me...    35   2.2  
UniRef50_Q75JZ1 Cluster: Similar to Dictyostelium discoideum (Sl...    34   3.8  
UniRef50_Q9XMS7 Cluster: Haem lyase; n=2; Alveolata|Rep: Haem ly...    33   5.0  
UniRef50_Q8I5J1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q18AM8 Cluster: Putative cell wall anchored protein pre...    33   8.7  
UniRef50_O97299 Cluster: Putative uncharacterized protein MAL3P7...    33   8.7  

>UniRef50_Q58791 Cluster: Uncharacterized protein MJ1396; n=1;
            Methanocaldococcus jannaschii|Rep: Uncharacterized
            protein MJ1396 - Methanococcus jannaschii
          Length = 2894

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = -3

Query: 410  SYRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNNS--NHSPSEG---QCAHYN--VFV 252
            S   +L + NNY ++     + +  LNS ++ S NNS     PS+G       YN  V  
Sbjct: 2294 SVENSLLYNNNYSILSYGNLSNLSVLNSLLRDSINNSIDIEVPSDGFLNNLKLYNSSVLN 2353

Query: 251  QSSYGRWRWNFSIKSNINI 195
              SYG + ++    SN+NI
Sbjct: 2354 SGSYGLFIYSLGSASNVNI 2372


>UniRef50_Q75JZ1 Cluster: Similar to Dictyostelium discoideum (Slime
           mold). Nucleotide exchange factor RasGEF P; n=2;
           Dictyostelium discoideum|Rep: Similar to Dictyostelium
           discoideum (Slime mold). Nucleotide exchange factor
           RasGEF P - Dictyostelium discoideum (Slime mold)
          Length = 587

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = -3

Query: 452 YSDQKSRNSIT*MSSYRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNNSNHSPSEGQC 273
           YSDQ S       S +   +   NN      N YN  +  N++I  + NN+N++ +    
Sbjct: 11  YSDQNSGVHNVNKSLHNLNINNGNNNYNYSNNNYNNNINNNNNINNNINNNNNNNNNNNN 70

Query: 272 AHYNVFVQSSYGRWRWNFSIKSNIN 198
            + N + Q+ Y ++  N    SN N
Sbjct: 71  NNINQYHQNHYDQYSDNNCNNSNSN 95


>UniRef50_Q9XMS7 Cluster: Haem lyase; n=2; Alveolata|Rep: Haem lyase
           - Tetrahymena pyriformis
          Length = 512

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 257 FVQSSYGRWRWNFSIKSNINI*EILTYKLVQNYNNSSLIQTI 132
           F + S+G W WN+ +   IN+  +L Y    + NN +LI+TI
Sbjct: 186 FQELSWGTW-WNWDLVEIINLYYLLLYLFYNHTNNITLIKTI 226


>UniRef50_Q8I5J1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 2558

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 353 YNEMVRLNSDIKPSTNNSNHSPSEGQCAHYNVFVQSSYGRWR-WNFSIKSNI-NI*EILT 180
           YN M  L+ D K S NN NH          +++  ++YG ++  N S   N+ N+  +  
Sbjct: 753 YNPMTNLSRDDKLSLNNVNHLQEINNNEDNSIYF-NNYGNYKEENISNVQNVQNVQNVQN 811

Query: 179 YKLVQNYNNSSLIQTI 132
            + VQN  N   +Q +
Sbjct: 812 VQNVQNVKNVQNVQNV 827


>UniRef50_Q18AM8 Cluster: Putative cell wall anchored protein
           precursor; n=2; Clostridium difficile|Rep: Putative cell
           wall anchored protein precursor - Clostridium difficile
           (strain 630)
          Length = 560

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 464 KN*FYSDQKSRNSIT*MSSYRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNN 303
           +N + +D+ ++N I+ ++SY+ T+CW   YG   I    E  + N D    TNN
Sbjct: 106 ENSYNNDKNTKNLISSLNSYKGTICWL-GYG---IENLLEHKKYNLDYVGKTNN 155


>UniRef50_O97299 Cluster: Putative uncharacterized protein MAL3P7.37;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL3P7.37 - Plasmodium falciparum
            (isolate 3D7)
          Length = 1542

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 25/106 (23%), Positives = 50/106 (47%)
 Frame = -3

Query: 467  RKN*FYSDQKSRNSIT*MSSYRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNNSNHSP 288
            +KN   SD   RN+++       + C    Y +++  +YN+  + N++   + NN+N+  
Sbjct: 1148 KKNTLNSDNNIRNNVS-NDCVNNSDCNSAYYNILREEKYNKNKKNNNNNDNNNNNNNNRD 1206

Query: 287  SEGQCAHYNVFVQSSYGRWRWNFSIKSNINI*EILTYKLVQNYNNS 150
            +E   + +N F +    ++  +  I +N N   I       N+NNS
Sbjct: 1207 NE-SVSSFNGF-EVDNSKYMSDLEINNNNNNININISSNNINFNNS 1250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,162,448
Number of Sequences: 1657284
Number of extensions: 12196514
Number of successful extensions: 26551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)