Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0308
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.5  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 MFLYNHRTVGGVGTFQSNLI 203
           + +YN    G  GTFQ+N++
Sbjct: 90  VLMYNSADEGFDGTFQTNVV 109


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 MFLYNHRTVGGVGTFQSNLI 203
           + +YN    G  GTFQ+N++
Sbjct: 90  VLMYNSADEGFDGTFQTNVV 109


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 MFLYNHRTVGGVGTFQSNLI 203
           + +YN    G  GTFQ+N++
Sbjct: 90  VLMYNSADEGFDGTFQTNVV 109


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 MFLYNHRTVGGVGTFQSNLI 203
           + +YN    G  GTFQ+N++
Sbjct: 90  VLMYNSADEGFDGTFQTNVV 109


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 262 MFLYNHRTVGGVGTFQSNLI 203
           + +YN    G  GTFQ+N++
Sbjct: 90  VLMYNSADEGFDGTFQTNVV 109


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 404 RKTLCWCNNYGVI-KINRYNEMVRLNSDIKPSTNNSNHSPSEGQCAH 267
           R+   W  N  +  K N   +  +  ++   +TNN NH    G   H
Sbjct: 285 RQVKIWFQNRRMKNKKNSQRQAAQQQNNNNAATNNQNHHHHAGHHIH 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,623
Number of Sequences: 336
Number of extensions: 3596
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)