Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0308
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    26   5.9  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.8  

>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 442 KNHEIPLLKCPLIEKHC 392
           KN ++ L KCP   KHC
Sbjct: 31  KNAKLSLQKCPACNKHC 47


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 359 NRYNEMVRLNSDIKPSTNNSNHSPS 285
           +R +E++ LN + KP+ +N NH  S
Sbjct: 875 DRASELLSLNGENKPAESNLNHLTS 899


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,947
Number of Sequences: 5004
Number of extensions: 55534
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)