Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0308
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    30   1.3  
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1...    27   8.9  
At3g57200.1 68416.m06368 hypothetical protein                          27   8.9  

>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 446 DQKSRNSIT*MSSYRKTLCWC-NNYGVIKINRYNEMVRLNSDIKPSTNNSNHSPSEGQCA 270
           D+K ++  +   ++   + W  ++ G  K  R  E      D+KP  +N+N  P E +CA
Sbjct: 397 DEKPKSPSSFQVNFEDQMAWALSSNGKKKTTRAIEDEEEEEDVKPENSNNNKKP-ENECA 455

Query: 269 HYN 261
             N
Sbjct: 456 TTN 458


>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
           protein [Nicotiana tabacum] GI:4160298; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 308

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 199 LILDLIEKFQRHLPYDDCTKTL 264
           +I++++EK ++HLP DD  K L
Sbjct: 46  IIMEMVEKEKQHLPSDDYIKRL 67


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 343 WSD*IQTSSRPRTTVTTHHQKGSVLTIMFLYNHRTVGGVGTF 218
           W     +  +PR  +TT    G   T+ ++Y H+ + GV TF
Sbjct: 104 WKFDYHSDLKPRICITTSTSAGLEQTLPWIYFHKVI-GVSTF 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,117
Number of Sequences: 28952
Number of extensions: 261654
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)