Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0307
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UU26 Cluster: Putative gag-pol polyprotein; n=1; Oryz...    34   3.7  
UniRef50_Q01HD8 Cluster: OSIGBa0157K09-H0214G12.19 protein; n=10...    33   4.9  
UniRef50_Q64XI5 Cluster: Putative uncharacterized protein; n=5; ...    33   6.5  

>UniRef50_Q6UU26 Cluster: Putative gag-pol polyprotein; n=1; Oryza
            sativa (japonica cultivar-group)|Rep: Putative gag-pol
            polyprotein - Oryza sativa subsp. japonica (Rice)
          Length = 1378

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 347  WTTNKTKAFHFSLHSEILQGIRKCTAQYYSATQTIRILW----ISLKCIIPFPRATLGYR 180
            W T    A       E  Q + K T     A QTI ++W      L  + PFPR   GYR
Sbjct: 1252 WPTALKGACDMVQRCEACQFLSKHTRLPAQALQTIPLIWPFSCCGLDILEPFPRGQGGYR 1311

Query: 179  SLFILPNKW 153
             LF+  +K+
Sbjct: 1312 FLFVAIDKF 1320


>UniRef50_Q01HD8 Cluster: OSIGBa0157K09-H0214G12.19 protein; n=10;
            Oryza sativa|Rep: OSIGBa0157K09-H0214G12.19 protein -
            Oryza sativa (Rice)
          Length = 1346

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -2

Query: 347  WTTNKTKAFHFSLHSEILQGIRKCTAQYYSATQTIRILWI----SLKCIIPFPRATLGYR 180
            W T    A+      E  Q   K T     A QTI + W+     L  + PFPR   GYR
Sbjct: 1048 WPTALKDAYDMVQRCEACQFHSKHTKLPAQALQTIPLTWLFSCWGLDILGPFPRGHGGYR 1107

Query: 179  SLFILPNKW 153
             LF+  +K+
Sbjct: 1108 FLFVAIDKF 1116


>UniRef50_Q64XI5 Cluster: Putative uncharacterized protein; n=5;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides fragilis
          Length = 739

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 63  NTCVKWNYSLFFYAL*FYMRKRRNDLRMHLPFVWQDK*AAITQRRSRKWYNTFQRY 230
           N   ++ + +F      Y     N  R +LP  W D+   + Q   R+WYN  ++Y
Sbjct: 603 NIYYRFGFGMFTNQKEMYFVDFNNFTRSNLPEGWNDEIGGVFQLLDRRWYNASRKY 658


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,613,288
Number of Sequences: 1657284
Number of extensions: 10486651
Number of successful extensions: 17707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17705
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)