Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0307
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    26   5.9  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    26   5.9  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   7.8  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 318 LLFALRDSSRHTKMYCSVLFCNTDDPYLVD 229
           +LF  RDSS      C++  CNTD PYLV+
Sbjct: 181 ILFT-RDSSMDWS--CNMTLCNTDYPYLVN 207


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 205 FLERRWVIAAYLSCQTNGRCILKSFLLFLM 116
           FL+R W I   ++    G C++ +F+  LM
Sbjct: 33  FLDREWAITIPVAVMLFGICLIGTFVSLLM 62


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 526 FNLISFTLSKLNLIVL*RIQYFVL*IN*LIRQLISFVQVI*KCTLFILW 380
           ++LI   L  + L VL RIQ+  L ++ LI + +    +   CTL  LW
Sbjct: 88  YSLILTCLVAILLSVLWRIQFAALRMHDLIEEELKMFVLQHNCTLADLW 136


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 483 TIRFNLLKVKLIKLNTVLILNDNA 554
           T+ FN+LK+ ++ L    +L+DN+
Sbjct: 444 TVLFNMLKIGVVLLGLFYLLHDNS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,803
Number of Sequences: 5004
Number of extensions: 50501
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)