Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0307
         (687 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    25   2.2  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    23   6.8  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   6.8  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
            protein protein.
          Length = 1881

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 282  KMYCSVLFCNTDDPYLVDISEMYYTIS*SDAGLSQPIYPAKQME 151
            +++  VL  N ++PY VD    YY    +  G    I  AK ++
Sbjct: 1045 EVFVQVLDENDNNPYFVDSVNDYYVSENASVGAEIAIILAKDLD 1088


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 340 LTKQRHFTSLCTPRFFKAYENVLLSIILQHRRSVSCGYL 224
           L K    T +C+    + YE +  SI      S+SC  L
Sbjct: 386 LPKLYEDTKICSRANARCYEQIRSSIAFTANTSISCSCL 424


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 340 LTKQRHFTSLCTPRFFKAYENVLLSIILQHRRSVSCGYL 224
           L K    T +C+    + YE +  SI      S+SC  L
Sbjct: 386 LPKLYEDTKICSRANARCYEQIRSSIAFTANTSISCSCL 424


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,553
Number of Sequences: 2352
Number of extensions: 11562
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)