Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0307
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.6  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.3  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 331 QRHFTSLCTPRFFKAYENVLLSIILQHRR 245
           Q + TS+  P F+  Y+N+ LS  L++++
Sbjct: 409 QSYSTSMRDPAFYMLYQNI-LSYFLRYKK 436


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 154 FIPPNAYRFHPPLNPRF 170


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 154 FIPPNAYRFHPPLNPRF 170


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 154 FIPPNAYRFHPPLNPRF 170


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 154 FIPPNAYRFHPPLNPRF 170


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 158 FIPPNAYRFHPPLNPRF 174


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 163 FIPPNAYRFHPPLNPRF 179


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 163 FIPPNAYRFHPPLNPRF 179


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 173 FILPNKWKVHP*VIPSF 123
           FI PN ++ HP + P F
Sbjct: 163 FIPPNAYRFHPPLNPRF 179


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 187 PSVALGNGIIHFRDIHKIRIVCVAE 261
           P +   +G++H        +VCVA+
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQ 262


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 187 PSVALGNGIIHFRDIHKIRIVCVAE 261
           P +   +G++H        +VCVA+
Sbjct: 238 PVILENSGVVHVAQDESTSLVCVAQ 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,397
Number of Sequences: 438
Number of extensions: 3671
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)