Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0306
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   7.2  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   9.5  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   9.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 72  LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 106


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 429 VTTTGSSSRA--PWATPTPRGWTRSSGTR*PTTLS 331
           ++T G+  R+  P +TP+    T+SSG   P ++S
Sbjct: 116 LSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVS 150


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 325 YWLSYCCRSL 296
           YWL+ CC +L
Sbjct: 56  YWLNVCCLNL 65


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +3

Query: 60  YTDTKFQVNQMHGSVVITEHP*KPL*IYILV*MMVIYFQNLYC*SYVCM 206
           Y +   QV  +H  +++T +  + +    L+  +   F  ++C  Y C+
Sbjct: 213 YKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFCI 261


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +3

Query: 60  YTDTKFQVNQMHGSVVITEHP*KPL*IYILV*MMVIYFQNLYC*SYVCM 206
           Y +   QV  +H  +++T +  + +    L+  +   F  ++C  Y C+
Sbjct: 38  YKNFLSQVEIIHNEILVTHNEIQTIFSVPLLMKIASQFVGIFCSLYFCI 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,090
Number of Sequences: 336
Number of extensions: 2308
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)