Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0306
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    28   1.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   2.6  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   3.4  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.9  

>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 572 SVLCLISTYIIFNKIVFYSLFRSLKSFNGYIRFFVLYWN 688
           +++   + Y+I N+  ++++F  L S  G I F  L W+
Sbjct: 379 AIIATFAMYLIPNQSAYHAMFWMLPSITGGIAFVALPWS 417


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
 Frame = +2

Query: 578 LCLISTYIIFNKIVFYSLFRSLKSFNGYI-------RFFVLYWN 688
           LCLI++  IF KIV    F+ + S   +I       R+F L+W+
Sbjct: 47  LCLITSANIFAKIVNVKAFKPVSSPTDHIIVATDSFRYFTLFWD 90


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 222 THKQFTYTHKTNNTSFENK*PSSILIYKSTVVFMDVPL 109
           T K  T  H T  T+ ENK   SI I     V+ D+PL
Sbjct: 124 TIKSSTTYHTTPTTASENKKIESITIPDHASVYNDLPL 161


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +1

Query: 160 WLFIFKTCIVSLMCV 204
           W+F++ TC++++ C+
Sbjct: 204 WVFLYTTCVLAMCCI 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,933
Number of Sequences: 5004
Number of extensions: 38125
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)