Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0306
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    31   1.0  
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    27   9.6  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    27   9.6  

>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 495 LQPGNLANRHHNSLLSFNIKDLN 563
           L PGNL   HHN+LL +  K +N
Sbjct: 336 LSPGNLTREHHNTLLEYLSKFMN 358


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 560 ERRRSVLCLISTYIIF--NKIVFYSLFRSLKSFNGYIRFFVL 679
           E+ R++L  I  +I+   N +VFY LFR  +  + +I F VL
Sbjct: 137 EKMRTLLGPILCFILVAPNFVVFYFLFRDEQFTDSFISFLVL 178


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 523 TTILYFLLILRI*TATFCFVFNKHLYHFQ*DCILFFISVFKEF 651
           TTI++F+ I R+        ++KH        +LFFIS+F  F
Sbjct: 96  TTIVFFITIDRVFAFFSPIFYHKHRNKISMYLVLFFISLFVFF 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,328
Number of Sequences: 27780
Number of extensions: 209163
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)