Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0305
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              28   7.5  
SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)                   27   9.9  
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)                   27   9.9  

>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 102 IKTIKTNLRYDGNRFQSSFNKKCNEYFIKKPYFI*VHLFCCSCEQNHRTCLLLL 263
           I  ++++LR+    +   F  K      ++ Y I VH  CC+C ++  TC  L+
Sbjct: 335 IVMVESHLRFIAVAYNLKFKMKFRT-LKQRSYKIRVHRKCCACGRSVHTCAALV 387


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 457 KNV*LKSKKICVIRIVIILLYNFYLL 380
           +N+ L S K+C I +V++L+Y+ + +
Sbjct: 187 RNIRLPSLKVCTILLVLLLIYDIFFV 212


>SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)
          Length = 398

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 467 WSILECSKTLYKNLKNKQFYKFVVRKNWHFK 559
           +SIL  ++   K +++++ Y+FV  K+W FK
Sbjct: 127 FSILNANREETKAMESQRAYRFVQGKDWGFK 157


>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 274

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 630 IRVKLNIKTKLERSLRSIY*S*INLKCQFLRTTNL*NC 517
           +++KL ++T+ +RS RS+Y   ++   +  R+  L  C
Sbjct: 57  VKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGC 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,012
Number of Sequences: 59808
Number of extensions: 265260
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)