Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4P5Y6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q2H8Y4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_UPI00006CC845 Cluster: hypothetical protein TTHERM_0028...    33   8.6  
UniRef50_Q8IKV0 Cluster: Putative uncharacterized protein; n=6; ...    33   8.6  

>UniRef50_Q4P5Y6 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 2184

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +1

Query: 4   HEPTIDRSRHPSAQRSYGVVTVAEDTSEENSIINAQEPIDAKAAGSVPHVRPETPRQ 174
           H P +D S H    RS  + + +E  S   S   A +    ++AGS   V P TPRQ
Sbjct: 84  HSPPLDYSPHRRGSRSSILASASEAAS---SAATASDRESIRSAGSSSRVGPSTPRQ 137


>UniRef50_Q2H8Y4 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 797

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 28  RHPSAQRSYGVVTVAED-TSEENSIINAQEPIDAKAAGSVPHVRPETPRQL 177
           RH  ++ + G + ++   TS ++S+I +Q    +K   SVP  R  TPRQ+
Sbjct: 343 RHQPSRTASGTILISRPGTSMKSSVIRSQRGRPSKVTKSVPTPRGRTPRQV 393


>UniRef50_UPI00006CC845 Cluster: hypothetical protein
           TTHERM_00285700; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00285700 - Tetrahymena
           thermophila SB210
          Length = 272

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 353 MKKTFQNNQTSNISFHNSVCSLFSSNSIFQIARRYGFYLC 234
           +KK+FQN     I+F+N++  LF   SIF     Y F+LC
Sbjct: 130 IKKSFQNTLLDRITFNNTLYGLFGF-SIFAFHFIYIFFLC 168


>UniRef50_Q8IKV0 Cluster: Putative uncharacterized protein; n=6;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 3347

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 330  IILKCFLHVTERKWIAFHECLYVHVFIFL 416
            IIL+   ++T  KWI  H  +Y H+F FL
Sbjct: 2693 IILENLKNITSEKWIFHHSIIYFHMFHFL 2721


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,867,610
Number of Sequences: 1657284
Number of extensions: 11214065
Number of successful extensions: 26451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26402
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)