Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    30   0.020
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    23   2.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.5  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 0.020
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 648 CPCIDSIFSIHK*KYTYNFINRNIIIQCETNIASEKLHFFIYYCESSFQFID 493
           C  +DS  +I      YNF+N N     E N A   L+F   + +++ +F+D
Sbjct: 386 CAMVDSCSNILTGDQFYNFLNHNFDRHYEENRAPLGLYFHAAWLKNNPEFLD 437


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 116 PLMPKQQDPCPTYGLKHPD 172
           P++ +   PC + G KHPD
Sbjct: 122 PVLVRDGKPCLSGGPKHPD 140


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 386 MPLCSCFYISYTRSIRSLYDL 448
           +P C   +   TR +R+LY L
Sbjct: 387 IPYCGKIFNLTTRQVRTLYKL 407


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 141 GSCCFGINGFLC 106
           G+C  GIN ++C
Sbjct: 36  GTCIDGINSYIC 47


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 367 LRSVT*RKHFKIIKRQTFHFTIR 299
           L+ +T  K F+ ++  TFH T+R
Sbjct: 626 LKKIT-GKMFQGVRSPTFHLTVR 647


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,652
Number of Sequences: 336
Number of extensions: 3297
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)