Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.36 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   1.9  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   5.9  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 591 INRNIIIQCETNIASEKLHFFIYYCESSFQFI 496
           +N NI          + + FF+YYC+ + +FI
Sbjct: 56  VNSNISRNISNTFFKKSIFFFVYYCKQALEFI 87


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 25  SRHPSAQRSYGVVTVAEDTSEENSIINAQEPIDAKAAGSVPHVRPET 165
           SR P+   +YG    + DT    S + +Q+P+ A      P + P+T
Sbjct: 262 SRRPTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLAPKT 308


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 64  TVAEDTSEENSIINAQEPIDAKAAGSVPH 150
           TV +D +E+N I+    P  +KA   +P+
Sbjct: 330 TVVKDVNEKNLIVQKTNPDGSKAMQEIPY 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,105
Number of Sequences: 5004
Number of extensions: 51527
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)