Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           29   3.5  
09_04_0165 + 15274448-15277336                                         29   4.6  
04_04_1226 - 31872413-31873036                                         28   6.0  
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    28   8.0  

>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 64  TVAEDTSEENSIINAQEPIDAKAAGSVPHVRPETP 168
           T+ +D  EE   +   E +  KAAG     R ETP
Sbjct: 194 TIEDDDEEEEGDVGETEAVGEKAAGEAADNRAETP 228


>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 22  RSRHPSAQRSYGVVTVAEDTS-EENSIINAQEPIDAKAAGSV 144
           R  HP A    GVV+  ED+S  E ++  +  P DA ++G V
Sbjct: 74  RKNHPRASLVNGVVSSLEDSSGGEPALCVSDSPEDASSSGKV 115


>04_04_1226 - 31872413-31873036
          Length = 207

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 79  TSEENSIINAQEPIDAKAAGS 141
           TSEEN  +   EPI+A ++GS
Sbjct: 2   TSEENKAVTPNEPIEASSSGS 22


>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 314 KCLTFDYFEMFSSCNRTQMDRIS*MPLCSCFYISYTRSIRSL 439
           K  T D F+MF+  ++T  DR+     C  F I +   +R+L
Sbjct: 294 KASTSDCFKMFNPVDKTTFDRVI-NKWCMAFLILFEEGLRNL 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,886,922
Number of Sequences: 37544
Number of extensions: 276561
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)