Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_36454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_18485| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_50785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 64  TVAEDTSEENSIINAQEPIDAKAAGSVPHVRPETP 168
           + AE  S+   ++NA+   DA A  +VP+   ETP
Sbjct: 520 STAEYYSQTGKVMNAERMADALAESTVPNATGETP 554


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 64   TVAEDTSEENSIINAQEPIDAKAAGSVPHVRPETP 168
            + A+  S+   ++NA+   DA A  SVP+   ETP
Sbjct: 905  STADYYSQTGKVMNAERVADALAESSVPNATGETP 939


>SB_36454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 606 YTYNFINRNIIIQCETNIASEKLHF 532
           Y Y  + +N+   C+ N+  EK HF
Sbjct: 4   YEYPLLTKNLFNMCDRNLIKEKKHF 28


>SB_18485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 557 FVSHCIIIFR-LIKLYVYFHLWIL 625
           FV H I + + L+K+  YFHLWI+
Sbjct: 16  FVDHYIKVSQDLVKIAHYFHLWII 39


>SB_50785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 606 YTYNFINRNIIIQCETNIASEKLHF 532
           Y Y  + +N+   C+ N+  EK HF
Sbjct: 45  YEYPLLTKNLFNMCDRNLIKEKKHF 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,770
Number of Sequences: 59808
Number of extensions: 360363
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)