Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine rece...    27   9.5  

>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 354 VTERKWIAFHECLYVHVFIFLIL 422
           VT +KW  +H  +++H FI  +L
Sbjct: 15  VTGQKWTKYHVRVFIHTFIIYVL 37


>Z82076-1|CAB04934.1|  363|Caenorhabditis elegans Hypothetical
           protein W07G1.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -2

Query: 331 IKRQTFHFTIRCVLYSVRIQYFK*HGGTVFI 239
           +K + FH+ + C+++S  +Q+F+   G++ I
Sbjct: 56  LKIRVFHWNLTCLIFSCSVQWFETFIGSLMI 86


>U00049-3|AAC47059.1|  339|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 41  HNVAMASSL*RRTLLKKTASSTHKNPLMPKQQDPCPTY 154
           ++V + S+   RTL++  + S   N  MP+Q+ P P Y
Sbjct: 297 NHVFLKSNRKGRTLMELRSMSKPFNNTMPRQESPSPNY 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,367
Number of Sequences: 27780
Number of extensions: 287436
Number of successful extensions: 714
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)