Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0304
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing...    31   0.95 
At3g24890.1 68416.m03121 synaptobrevin-related similar to SYNAPT...    29   2.2  
At3g54070.1 68416.m05978 ankyrin repeat family protein contains ...    27   8.8  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    27   8.8  

>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein contains Pfam
           profile PF00638: RanBP1 domain
          Length = 443

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = -1

Query: 404 NMNIKAFMKCDPFAFCYMKKTFQNNQTSNISFHNSVCSLFSSNS 273
           N N+K+F    PFA       F NNQ+S+  F +S    FSS S
Sbjct: 134 NTNVKSFSNNIPFASNNQPGIFSNNQSSD--FSSSQSGFFSSQS 175


>At3g24890.1 68416.m03121 synaptobrevin-related similar to
           SYNAPTOBREVIN-RELATED PROTEIN GB:P47192 from
           [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A.
           (1992) 89(9), 3894-3898); contains Pfam profile PF00957:
           synaptobrevin
          Length = 114

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 381 EMRSICVLLHEENISK*SNVKHFISQF-GVFFIQFEFNISNSTEVRFLFVLR 229
           E R + +L H E ISK + VK  +++  GV     E  +  S +++ L  LR
Sbjct: 16  EQRVLVLLAHPEEISKLAKVKALVTKMKGVMMENIEKALDRSEKIKILVDLR 67


>At3g54070.1 68416.m05978 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 574

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 554 IFVSHCIIIFRLIKLYVYFHLWILKIESMHGHMFI 658
           + +S    +  L   Y+YFHLW   + S++  MF+
Sbjct: 528 VLISCLASLTALTFAYLYFHLWFNTLRSVYISMFL 562


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 83  LKKTASSTHKNPLMPKQQDPCPTYGLKHP 169
           L  T +S H N L P QQ P P   L HP
Sbjct: 311 LDPTVTSYHSN-LQPMQQTPLPKRQLHHP 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,300
Number of Sequences: 28952
Number of extensions: 242764
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)