Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0303
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    96   5e-21
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.7  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   7.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.6  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 44/93 (47%), Positives = 58/93 (62%)
 Frame = +3

Query: 234 YNIINRSNLXTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISXERGKKE 413
           + + +  NL TSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K 
Sbjct: 214 FMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKP 272

Query: 414 TFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIEL 512
            F                 +V +HH+FTVG+++
Sbjct: 273 IFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDV 305



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 39/85 (45%), Positives = 49/85 (57%)
 Frame = +1

Query: 1   YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 180
           YPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  A+
Sbjct: 136 YPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAI 195

Query: 181 GITAFLLXLSLPVLAGAITILLTDR 255
            IT+ LL L+LPVLAG + +L +DR
Sbjct: 196 MITSILLLLTLPVLAGGLFMLFSDR 220


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 419  WLFRNNLCYTSNWVIRIYCLSSSYIHCRYRI 511
            WLF NN+  ++ W  ++    S+++H   RI
Sbjct: 3959 WLFINNIHLSTPWAEKLPSKMSNHLHKNSRI 3989


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 497 CRYRIGTRAYFTSATRIYWLYQQE 568
           C+Y + + A F   +  YWLY ++
Sbjct: 195 CKYELDSLASFLKLSYTYWLYTKD 218


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 383 YYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRIGT 517
           YY T   KK +   F  +LCYT       Y      ++C Y   T
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYST 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,792
Number of Sequences: 5004
Number of extensions: 34291
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)