Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0303
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183...    29   3.4  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   5.9  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    28   5.9  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   7.8  

>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
            12718443-12718465,12718616-12720653,12720736-12720965,
            12722207-12722329,12722438-12723010,12724684-12724733,
            12726828-12726923,12726987-12727394,12727609-12727795
          Length = 1407

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 425  FRNNLCYTSNWVIRIYCLSSSYI----HCRYRIGTRAYFTSATR 544
            +++N CY  NWV +++      +    HC  RI T +  TS T+
Sbjct: 1247 WKHNKCYPWNWVWQVFQAMKGILDDPFHCLMRICTESSLTSQTQ 1290


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 398 KRKKRNFWLFRNNLCYTSNWVIRIYCLS 481
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 IWYNFSYYFTRKRKKRNFWLFRNN 436
           IW  F+   T K K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 CWRRRPNFISTFILIFWTS*SLYFNFTRI 367
           CWRR P     F+L F +  +LYF+ + I
Sbjct: 444 CWRRPPVLALCFLLFFGSVEALYFSASLI 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,402
Number of Sequences: 37544
Number of extensions: 191692
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)