Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0303
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     30   2.0  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     30   2.0  
SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)               28   7.9  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.9  

>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 347 YFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRIGTRAY 526
           Y N    W   SY         ++WL+++ L   S W+ + Y  + SY   +  +    Y
Sbjct: 57  YLNVLSYWLYKSYL-----NVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLY 111

Query: 527 FTSAT----RIYWLYQQELKFL 580
           +   +     +YWLY+  L  L
Sbjct: 112 WPYKSYLNVLLYWLYKSYLNVL 133


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 347 YFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIHCRYRIGTRAY 526
           Y N    W   SY         ++WL+++ L   S W+ + Y  + SY   +  +    Y
Sbjct: 41  YLNVLSYWLYKSYL-----NVLSYWLYKSFLNVLSYWLFKSYLNALSYCPYKSYLNVLLY 95

Query: 527 FTSAT----RIYWLYQQELKFL 580
           +   +     +YWLY+  L  L
Sbjct: 96  WPYKSYLNVLLYWLYKSYLNVL 117


>SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)
          Length = 383

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 219 FSWSYYNIINR--SNLXTSFF 275
           FSW+YY+IINR  S +   FF
Sbjct: 81  FSWNYYSIINRYQSTVTAQFF 101


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 199  LXLSLPVLAGAITILLTDRTXIHHFLILLEEET 297
            L LSLPVL  A+ +LL ++T +   L+L + ++
Sbjct: 1053 LCLSLPVLEQALNLLLVNKTLMSCILVLQKRKS 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,580
Number of Sequences: 59808
Number of extensions: 217729
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)