Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2GDM2 Cluster: Putative membrane protein; n=1; Neorick...    33   3.7  
UniRef50_A5BU78 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q1H1M2 Cluster: Type I secretion system ATPase, PrtD; n...    32   8.6  
UniRef50_A0DE53 Cluster: Chromosome undetermined scaffold_47, wh...    32   8.6  

>UniRef50_Q2GDM2 Cluster: Putative membrane protein; n=1;
           Neorickettsia sennetsu str. Miyayama|Rep: Putative
           membrane protein - Neorickettsia sennetsu (strain
           Miyayama)
          Length = 493

 Score = 33.1 bits (72), Expect = 3.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 185 FFFKINAFKFISVTFCLINCMRYTFYTNKTLILL 84
           FFFK+NAF+ +     L+ C+ +TF+ N    +L
Sbjct: 56  FFFKLNAFEKVGTALILVACL-FTFFQNNLFYIL 88


>UniRef50_A5BU78 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 306

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +3

Query: 138 AKRYRNKFKSIYLKKKR*RHPY--RDISTTTKQSLIHTK*GTRRGHLHSASNESETRRLP 311
           +KR  N++ S+ L + + R  Y    ++ T +Q L+H    + R HL + S  S T  LP
Sbjct: 2   SKRIWNRWSSLLLCQPKMRLIYFLMGMNYTKRQGLLHVPHFSSRFHLPTPSRLSNTHFLP 61

Query: 312 RLTGITSKPSEPLT 353
              G+  +  +PL+
Sbjct: 62  VHIGVMHRYDQPLS 75


>UniRef50_Q1H1M2 Cluster: Type I secretion system ATPase, PrtD; n=1;
           Methylobacillus flagellatus KT|Rep: Type I secretion
           system ATPase, PrtD - Methylobacillus flagellatus
           (strain KT / ATCC 51484 / DSM 6875)
          Length = 568

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 317 QPWEPACFTFVTRTV*MAPSCTSFRMYQRLLCCR---TYVSIRMPLTFFFKINAF 162
           + W  A F+ VT  + +AP+    ++Y R+L  R   T +++ +   F F + AF
Sbjct: 18  EAWAIAAFSMVTNILMLAPTLYLLQLYDRVLLSRSEMTLLAVTLITVFLFMVMAF 72


>UniRef50_A0DE53 Cluster: Chromosome undetermined scaffold_47, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_47,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 154

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 360 MISLFPGYQALFETVR*IFIQWSTQKR--VFVNNSKWRKKKQFNIDNMNLI 506
           M S  P YQ  + +++ I  Q+ TQK+   F  N K +++KQ+N+  + LI
Sbjct: 86  MNSTIPSYQQQYNSIQYIANQFRTQKKSNCFTQNEKKQQQKQWNLRLILLI 136


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,226,117
Number of Sequences: 1657284
Number of extensions: 8941825
Number of successful extensions: 19617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19612
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)