Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   3.7  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   4.9  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    25   4.9  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   6.5  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   6.5  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    25   8.6  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   8.6  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   8.6  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   8.6  

>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +3

Query: 159 FKSIYLKKKR*RHPYRDISTTTKQSLIHTK*GTRRGHLHSASNES---ETRRLPRLTGIT 329
           FK  YL+K R    +  I   T    I  +       L S  ++S   ETR++  L   T
Sbjct: 286 FKECYLQKLRYGQEFHQIMGDTDIQSIKNEGDHLVVQLTSQMDKSKKPETRKIDVLYVAT 345

Query: 330 SKPSEPLTRLMISLFPGYQ 386
               E    LM SLFP  Q
Sbjct: 346 GYDHESFDVLMSSLFPNSQ 364


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 370 CFPAIRHYSKLYDE 411
           C P  RH+SKLY+E
Sbjct: 361 CDPGSRHFSKLYNE 374


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 330 SKPSEPLTRLMISLFPGYQALFETVR*IF 416
           SKPS PLT L I+  P ++ L ET+  IF
Sbjct: 155 SKPS-PLTILKITRDPEFKQLAETITEIF 182


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 414 FIQWSTQKRVFVNNSKWRKKKQFNIDNMNLI 506
           F   S Q+R +    +W KK + NI +M+ +
Sbjct: 424 FFYTSLQRRGYAGVRRWAKKARVNIADMDAV 454


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 115 HFILIKH*FFYVLALSFPNSAFDWAF 38
           +F ++K+ F Y L+ S+  S  DW F
Sbjct: 150 NFFMVKNEFLYRLSPSYICSIIDWIF 175


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = -3

Query: 248 FRMYQRLLCCRTYVSIRMPLTFFFKINAFKFISVTFCLINCMRYTFYTNK 99
           F+ +  L   R +  +  P+ FF  + A     + + ++  + YTF   K
Sbjct: 270 FKEFVTLHLVRPFAMLATPIVFFIAMFASYVYGILYLVLTTIPYTFGMTK 319


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 367 PCFPAIRHYSKLYDEFSFNGAL 432
           PC     HY+ L D  SFNG L
Sbjct: 41  PCQLRFVHYNNLEDPNSFNGLL 62


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 168 IYLKKKR*RHPYRDISTTTKQSLIHTK*GTRRGHLHSASNES 293
           ++L+K R   P  D   TT+  ++       +GH  SAS+ S
Sbjct: 61  LWLEKSRAEVPDADFLMTTRNIMLSFPSNEEQGHQRSASHGS 102


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 404 TMNFHSMEHSKTCFRKQFKMEKK 472
           T N+ SMEH K  FR    +E++
Sbjct: 2   TENYGSMEHRKKSFRNNENLEQQ 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,904
Number of Sequences: 5004
Number of extensions: 40996
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)