Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0389 - 20273637-20274383,20274488-20274979                       29   1.6  
06_03_0387 - 20244279-20245025,20245130-20245621                       29   1.6  
06_03_0385 - 20234160-20234798,20234888-20235238                       29   1.6  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    27   8.7  

>06_03_0389 - 20273637-20274383,20274488-20274979
          Length = 412

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/25 (40%), Positives = 21/25 (84%)
 Frame = +1

Query: 136 KQNVTEINLKAFILKKNVNGIRIET 210
           +++VT++ +K  +LKK+ NG+RI++
Sbjct: 271 EKDVTDVTVKNCVLKKSTNGVRIKS 295


>06_03_0387 - 20244279-20245025,20245130-20245621
          Length = 412

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/25 (40%), Positives = 21/25 (84%)
 Frame = +1

Query: 136 KQNVTEINLKAFILKKNVNGIRIET 210
           +++VT++ +K  +LKK+ NG+RI++
Sbjct: 271 EKDVTDVTVKNCVLKKSTNGVRIKS 295


>06_03_0385 - 20234160-20234798,20234888-20235238
          Length = 329

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/25 (40%), Positives = 21/25 (84%)
 Frame = +1

Query: 136 KQNVTEINLKAFILKKNVNGIRIET 210
           +++VT++ +K  +LKK+ NG+RI++
Sbjct: 224 EKDVTDVTVKNCVLKKSTNGVRIKS 248


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 146 LQK*I*KHLS*KKTLTASVSRHKYDNKAIVDTYE 247
           L + I KH    K  T  V+R  YD   IVD YE
Sbjct: 878 LYREIKKHTPHIKHFTREVARRSYDTDMIVDGYE 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,531,811
Number of Sequences: 37544
Number of extensions: 226431
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)