Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)                        30   0.95 
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_23653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_20413| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   3.8  
SB_59559| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_8168| Best HMM Match : Oxidored_q4 (HMM E-Value=0.42)               28   5.1  
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 28   5.1  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_34638| Best HMM Match : Fork_head (HMM E-Value=0)                   27   8.9  
SB_47058| Best HMM Match : Fork_head (HMM E-Value=0)                   27   8.9  
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)               27   8.9  
SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)                   27   8.9  

>SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)
          Length = 689

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 276 SASNESETRRLPRLTGITSKPSEPLTRLMIS 368
           SA NES   + PR T ITSK S P  +L +S
Sbjct: 424 SAENESPHAKSPRTTRITSKCSPPSDKLELS 454


>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 146 TFCLINCMRYTFYTNKTLILLRFS 75
           TF  I C+ YT+YT +TL +L ++
Sbjct: 57  TFITIFCVHYTYYTTRTLHVLLYT 80


>SB_23653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 294 HFRYSHCVNGPFLYLISYVSTIALL 220
           HFRYS  VNG ++ ++S  + +A L
Sbjct: 137 HFRYSRSVNGLYMAMVSISAIVARL 161


>SB_20413| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 381

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 197 MPLTFFFKINAFKFISVTFCLINCMRYTF-YTNKTLILLRFSI 72
           MP  F   +     +   FC +N + Y+F  T  TL+L+  SI
Sbjct: 100 MPFAFLTIVTQGWILGQEFCQVNALLYSFLVTEATLVLVTISI 142


>SB_59559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -2

Query: 393 IMPDSRETRISLASLKAHLASM*YRSALGAGVFHFR--YSHCVNGPFLYLISYVSTIA-L 223
           +  D  +T +S    K  LA +   S LGAG++      +  + GP L L   ++ IA L
Sbjct: 19  VAKDYTKTELSRCLSKIDLAGLGIASTLGAGIYVLAGIVAKNIAGPGLVLSFLIAGIASL 78

Query: 222 LSYLC 208
           +S LC
Sbjct: 79  MSALC 83


>SB_22572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 387 ALFETVR*IFIQWSTQKRVFVNNSKWRKKK 476
           A F     +F+ W  +K++ VN   W +KK
Sbjct: 243 AFFTACPRLFLPWPHEKKIRVNGKTWSRKK 272


>SB_8168| Best HMM Match : Oxidored_q4 (HMM E-Value=0.42)
          Length = 268

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -2

Query: 393 IMPDSRETRISLASLKAHLASM*YRSALGAGVFHFR--YSHCVNGPFLYLISYVSTIA-L 223
           +  D  +T +S    K  LA +   S LGAG++      +  + GP L L   ++ IA L
Sbjct: 19  VAKDYTKTELSRCLSKIDLAGLGIASTLGAGIYVLAGIVAKNIAGPGLVLSFLIAGIASL 78

Query: 222 LSYLC 208
           +S LC
Sbjct: 79  MSALC 83


>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +1

Query: 28  LRRERPNQKHCSGTTMLKRKRINVLLV*NVYRIQLIKQNVTEINLKAFILKKNVNGIR 201
           ++RER  QK+    +  +RK++       V R+Q +K+   E+N  A  L++ V  ++
Sbjct: 305 VKRERKKQKNRVAASKCRRKKLEREAQLEV-RVQQLKEKSIELNAVASALRQQVGELK 361


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +3

Query: 432 QKRVFVNNSKWRKKKQFNIDNMNL 503
           Q+ V+ +++K +KK++ N DNMN+
Sbjct: 864 QRSVYKHSTKHKKKRRDNTDNMNV 887


>SB_34638| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 312

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 271 KWPLLVPHFVCINDCFVVVLMSRYG 197
           KW   + H + +NDCFV V  S +G
Sbjct: 135 KWQNSIRHNLSLNDCFVKVPRSIFG 159


>SB_47058| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 312

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 271 KWPLLVPHFVCINDCFVVVLMSRYG 197
           KW   + H + +NDCFV V  S +G
Sbjct: 135 KWQNSIRHNLSLNDCFVKVPRSIFG 159


>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
          Length = 4240

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 459  LNCLRKHVFECSIE*KFIVQFRIMPDSRETRISLASLK 346
            +NC  ++VFE  ++    V     PDS E   ++ASLK
Sbjct: 1238 MNCFGENVFENGVDHVEAVSLMEEPDSPEALQAMASLK 1275


>SB_737| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-35)
          Length = 432

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 248 FRMYQRLLCCRTYVSIRMPLTFFFKINAFKFISVTFCLINCMRY 117
           F  Y  +L C T + I +PL  F   N F+ + V    ++C R+
Sbjct: 246 FNSYGIVLGCAT-LGINVPLIIFCYFNVFRAVGVHSTRMDCHRH 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,365
Number of Sequences: 59808
Number of extensions: 298567
Number of successful extensions: 558
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)