Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040518-1|AAH40518.1|  904|Homo sapiens MAP7D3 protein protein.       29   9.3  
AL078638-12|CAI41063.2|  876|Homo sapiens MAP7 domain containing...    29   9.3  
AL078638-11|CAI41064.2|  841|Homo sapiens MAP7 domain containing...    29   9.3  
AK022463-1|BAB14044.1|  507|Homo sapiens protein ( Homo sapiens ...    29   9.3  

>BC040518-1|AAH40518.1|  904|Homo sapiens MAP7D3 protein protein.
          Length = 904

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 RRGHLHSASNESETRRLPRLTGITS 332
           R  +LHS++++ +  R PR+TG+T+
Sbjct: 255 RDSNLHSSTDKEQAERKPRVTGVTN 279


>AL078638-12|CAI41063.2|  876|Homo sapiens MAP7 domain containing 3
           protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 RRGHLHSASNESETRRLPRLTGITS 332
           R  +LHS++++ +  R PR+TG+T+
Sbjct: 227 RDSNLHSSTDKEQAERKPRVTGVTN 251


>AL078638-11|CAI41064.2|  841|Homo sapiens MAP7 domain containing 3
           protein.
          Length = 841

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 RRGHLHSASNESETRRLPRLTGITS 332
           R  +LHS++++ +  R PR+TG+T+
Sbjct: 192 RDSNLHSSTDKEQAERKPRVTGVTN 216


>AK022463-1|BAB14044.1|  507|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12401 fis, clone MAMMA1002796. ).
          Length = 507

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 258 RRGHLHSASNESETRRLPRLTGITS 332
           R  +LHS++++ +  R PR+TG+T+
Sbjct: 93  RDSNLHSSTDKEQAERKPRVTGVTN 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,398,750
Number of Sequences: 237096
Number of extensions: 1214187
Number of successful extensions: 1938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1938
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)