Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 251 SFRMYQRLLCCRTYVSIRMPLTFFFKINAFKFISVTFCLINCMRYTFYTNKTLILLRFSI 72
           SF++ Q +L C       + +  FF+    K   + F     +  T YT   ++LL  S 
Sbjct: 335 SFKLIQEVLVCGVISGASLAVDAFFEAETIKHAELMFFEKTLIPMTSYTLSAILLLILSF 394

Query: 71  VVP 63
           ++P
Sbjct: 395 LMP 397


>Z19158-5|CAJ76965.1|  237|Caenorhabditis elegans Hypothetical
           protein T23G5.2b protein.
          Length = 237

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 353 EANDILVSRLSGIIRNCTMNFHSMEHSKTCFRKQFKMEKK 472
           EA +I  S    +  NCT   H+   + TCF +   ++ K
Sbjct: 96  EATNISFSSRINVKENCTYYVHAENENWTCFEQSASLDVK 135


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 353 EANDILVSRLSGIIRNCTMNFHSMEHSKTCFRKQFKMEKK 472
           EA +I  S    +  NCT   H+   + TCF +   ++ K
Sbjct: 96  EATNISFSSRINVKENCTYYVHAENENWTCFEQSASLDVK 135


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 164 FKFISVTFCLINCMRYTFYTNKTLI 90
           F F+S+ FC+I      ++TNK  +
Sbjct: 346 FDFLSIFFCIIRIFLEVYHTNKNYV 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,925
Number of Sequences: 27780
Number of extensions: 227986
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)