Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.79 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +3

Query: 63  GNDN-AKT*KNQCFISIKCIPHTVN---*AKRYRNKFKSIYLKKKR*RHPYRDISTT 221
           GN+N A T  N+C ++I+  P T+     A++ R + K ++  +++ ++    + TT
Sbjct: 475 GNNNMAATYMNECLLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMKLETT 531


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 198 PYRDISTTTKQSLIHTK*GTRRGHLHSASNESETRRLPRLTGITSKPSEPLTRLMI 365
           P    STTT   +  TK    R HL+S  + + +    +L    +K  +  T L I
Sbjct: 321 PVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGI 376


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 370 CFPAIRHYSKLYDEFS 417
           C P+++H +K   +FS
Sbjct: 159 CVPSVKHVAKCATDFS 174


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 450 NNSKWRKKKQFNIDNMNLI 506
           NN+ + KK  +NI N+  I
Sbjct: 104 NNNNYNKKLYYNIINIEQI 122


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 450 NNSKWRKKKQFNIDNMNLI 506
           NN+ + KK  +NI N+  I
Sbjct: 104 NNNNYNKKLYYNIINIEQI 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,133
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)