Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0302
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50665.1 68418.m06278 hypothetical protein                          30   0.78 
At5g50565.1 68418.m06262 hypothetical protein                          30   0.78 
At1g36970.1 68414.m04608 hypothetical protein                          29   1.8  
At4g13160.1 68417.m02048 expressed protein contains Pfam profile...    27   7.3  

>At5g50665.1 68418.m06278 hypothetical protein
          Length = 116

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -3

Query: 236 QRLLCCRTYVSIRMPLTFFFKINAFKFISVTFCLINCMRYTFYTNKTLILLRFSIVV 66
           +R  CCR YVS R+ L+ +FK N  +  +     +N  R  FY+ +   L+ FS+++
Sbjct: 10  RRRTCCRNYVS-RLVLSVYFKYNIQEIFAAMVISLNDKR-LFYSFEVFNLV-FSLLL 63


>At5g50565.1 68418.m06262 hypothetical protein
          Length = 116

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -3

Query: 236 QRLLCCRTYVSIRMPLTFFFKINAFKFISVTFCLINCMRYTFYTNKTLILLRFSIVV 66
           +R  CCR YVS R+ L+ +FK N  +  +     +N  R  FY+ +   L+ FS+++
Sbjct: 10  RRRTCCRNYVS-RLVLSVYFKYNIQEIFAAMVISLNDKR-LFYSFEVFNLV-FSLLL 63


>At1g36970.1 68414.m04608 hypothetical protein
          Length = 439

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 1/147 (0%)
 Frame = +3

Query: 39  KAQSKALFGNDNAKT*KNQCFISIKCI-PHTVN*AKRYRNKFKSIYLKKKR*RHPYRDIS 215
           +A+   L+ N    + K++   S+K +    +N  K+ +   KS+ L K R    Y  IS
Sbjct: 153 EAEDIKLWVNSLLSSVKHEFAESVKKLRSQNLNLLKKIK-ALKSVKLPKFR----YHKIS 207

Query: 216 TTTKQSLIHTK*GTRRGHLHSASNESETRRLPRLTGITSKPSEPLTRLMISLFPGYQALF 395
            + +QS        R    H  S+ES    +     IT+ PSEPLT    SL  G   L 
Sbjct: 208 RS-RQSTSPPFKKVRLALNHHTSSESPVNPVVYSPNITTPPSEPLT----SLHEGDNVLS 262

Query: 396 ETVR*IFIQWSTQKRVFVNNSKWRKKK 476
           ++V       S      V++  WR+ K
Sbjct: 263 DSVHDGDFAVSGDSDKIVDDLSWRELK 289


>At4g13160.1 68417.m02048 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 282

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 191 LTFFFKINAFKFISVTFCLINCMRYTFYTNKTLILL 84
           LTF+  + AF  ++  +CL+    + F T+K L+ +
Sbjct: 9   LTFYGILVAFMELAFAYCLLCVSAFVFITSKLLLFM 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,580,661
Number of Sequences: 28952
Number of extensions: 198394
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)