Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0301
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    25   0.43 
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   1.7  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    23   1.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   5.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.0  

>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 45  CQQHYYETHYFIGCITNL 98
           C+   + T YF+GC+ +L
Sbjct: 85  CRSECFSTKYFVGCVESL 102


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 45  CQQHYYETHYFIGCITNL 98
           C+++ + T YF GCI  L
Sbjct: 85  CRKNCFTTDYFKGCIDTL 102


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 45  CQQHYYETHYFIGCITNL 98
           C+++ + T YF GCI  L
Sbjct: 85  CRKNCFTTDYFKGCIDTL 102


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 486 KINESLRFNFNKVVFWTDSTIVL 554
           +IN     N  K++ W D TI L
Sbjct: 4   RINHKKFINTTKLLLWCDQTIGL 26


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 351 YKRKHHRLFAKRL*IYVVLYIWVQY 277
           YKR H +   ++L +   L +WV Y
Sbjct: 231 YKRPHDQWAYEKLNVNDGLQLWVDY 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,907
Number of Sequences: 336
Number of extensions: 3562
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)