Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0301
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125...    29   3.4  
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997     29   4.5  
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    28   7.9  

>12_02_0338 -
           17712076-17712261,17712339-17712431,17712533-17712593,
           17712681-17712791,17712872-17713123,17713207-17714543,
           17714649-17715317,17715403-17715642
          Length = 982

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 517 IRLCSGQTQLLSWGGWVCRLN 579
           +R C+ QT   SWGGW   LN
Sbjct: 204 VRNCALQTMAKSWGGWKTTLN 224


>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
          Length = 471

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 309 FTDASQTAYGACAYIRTIDKDSSVVTRLL--CSKGKVAPLKAITIPRLELCG 458
           F+ AS   +        + +D+  + RLL  C    VA ++ I  P+LE+ G
Sbjct: 240 FSSASWNGFAGAELQEVVIEDAPCLERLLPLCPNDGVAAIRVIAAPKLEIMG 291


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 547 IVESVQNTT--LLKLKRKDSLIXLYSLAPRTAPHSSNLGIV 431
           IVES   T   LL  +  D  + L+S   +T PH SNL I+
Sbjct: 686 IVESETTTLGRLLDFQCSDVALTLFSKIQKTRPHPSNLDIL 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,035
Number of Sequences: 37544
Number of extensions: 337731
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)