Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0301
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    64   9e-11
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    64   9e-11
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    55   5e-08
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    40   0.002
AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical ...    29   3.0  
U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +3

Query: 294  IELHIFTDASQTAYGACAYIRTIDKDSSVVTRLLCSKGKVAPLKA--ITIPRLELCGAVL 467
            + + +F+DAS+  Y    Y++   KD   V +LL SK K+ P     +TIP++EL    +
Sbjct: 1435 VNILVFSDASKDIYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAINI 1494

Query: 468  GARLYXKINESLRFNFNKVVFWTDSTIVLGWL 563
            GA L    +E LR +  +V+F+TDS+    W+
Sbjct: 1495 GANLAYSTSEQLRLDVAEVIFFTDSSCASYWI 1526



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 61   TKRIILSGASQIYDPLGLISPVITIAKILLQKCWLLKLNWDEPVPCDVAQSWDR 222
            TKR + S  +  +DPLGL++P+I   K+L+Q+ W  K+ W   +P  +  +W +
Sbjct: 1357 TKREVASKMAATFDPLGLVTPIIVHFKLLIQQIWESKVTWKTKIPGKLLTAWKK 1410


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
 Frame = +3

Query: 294  IELHIFTDASQTAYGACAYIRTIDKDSSVVTRLLCSKGKVAPLKA--ITIPRLELCGAVL 467
            + + +F+DAS+  Y    Y++   KD   V +LL SK K+ P     +TIP++EL    +
Sbjct: 1435 VNILVFSDASKDIYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIPKMELLAINI 1494

Query: 468  GARLYXKINESLRFNFNKVVFWTDSTIVLGWL 563
            GA L    +E LR +  +V+F+TDS+    W+
Sbjct: 1495 GANLAYSTSEQLRLDVAEVIFFTDSSCASYWI 1526



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 61   TKRIILSGASQIYDPLGLISPVITIAKILLQKCWLLKLNWDEPVPCDVAQSWDR 222
            TKR + S  +  +DPLGL++P+I   K+L+Q+ W  K+ W   +P  +  +W +
Sbjct: 1357 TKREVASKMAATFDPLGLVTPIIVHFKLLIQQIWESKVTWKTKIPGKLLTAWKK 1410


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical protein
            K06C4.15 protein.
          Length = 1067

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = +3

Query: 294  IELHIFTDASQTAYGACAYIR-TIDKDSSVVTRLLCSKGKVAPLKAI--TIPRLELCGAV 464
            I+L IF+DASQ  Y A AY   +   D   V  L+ SK K+ P K    TIP+LEL G  
Sbjct: 977  IQLLIFSDASQDIYAAAAYAYFSYGDDRPPVISLITSKNKIKPSKETNWTIPKLELLGIE 1036

Query: 465  LGARLYXKINESLRFNFNKVVFWTDSTIVL 554
            +G+ L   I + L      +  +TDS+  L
Sbjct: 1037 IGSNLASSIVKELSCKVTNIRLFTDSSCAL 1066



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 61   TKRIILSGASQIYDPLGLISPVITIAKILLQKCWLLKLNWDEPVPCDVAQSW 216
            TKR + S  ++ +DPLGLISP+  + K  +QK    ++NW +P+P  +   W
Sbjct: 902  TKRDVASKMAETFDPLGLISPIQVLMKRFIQK---HEVNWKDPIPKHLLDDW 950


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +1

Query: 61  TKRIILSGASQIYDPLGLISPVITIAKILLQKCWL--LKLNWDEPV 192
           ++R + S  + IYDP+GL+ P++   K+  +K W+   K  WD P+
Sbjct: 432 SRRTVSSAIASIYDPMGLLVPLLLPLKLFQRKLWIEEEKYGWDTPL 477



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +3

Query: 297 ELHIFTDASQTAYGACAYIRTIDKDSSVVTRLLCSKGKVAPLK-AITIPRLELCGAVLGA 473
           E+  F DASQ A  AC Y++     +     LL  K  V  LK   TIP+LE+    +  
Sbjct: 511 EIIAFADASQEAIAACIYVK-----NKYGVNLLFGKSNVKSLKEKWTIPKLEVQALKVAT 565

Query: 474 RLYXKINESLR---FNFNKVVFWTDSTIVLGWL 563
                   +L+       KV+ ++DS I L WL
Sbjct: 566 DRALSTLTALQDGDIKVTKVILFSDSEITLAWL 598


>AF026215-4|AAB71322.1|  843|Caenorhabditis elegans Hypothetical
           protein F09G2.4 protein.
          Length = 843

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 562 NHPRTIVESVQNTTLLKLKRKDSLIXLYSLAPRTAPHSSNLGIVIALSGATLPLEH 395
           N P  ++    + +L +++RKD    L +   RT     +  IVI  +G  L L H
Sbjct: 192 NRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAH 247


>U13875-14|AAA21155.1|  196|Caenorhabditis elegans Hypothetical
           protein C26E6.1 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +3

Query: 393 LCSKGKVAPLKAITIPRLELCGAVLGARLYXKINESLRFNFNKVVFW 533
           +CS+  ++P K      +E+CG+ L  R+  K +E ++    +++F+
Sbjct: 56  VCSQYSLSPHKTHFAMFMEMCGSELTGRIKFKSDEQVKSVICQIIFF 102


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 530 LDRLNYCPGVVGYAD*TYEIIWFKIRTAEIHWLN 631
           L+ L + P ++      Y I+W  + TA   W+N
Sbjct: 148 LEGLKFDPALISIVTGPYRILWASVYTAYPEWIN 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,269
Number of Sequences: 27780
Number of extensions: 320127
Number of successful extensions: 706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)