Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0301
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 SQTAYGACAYIRTIDKDSSVVTRLLCSKGKVAPLKAI 431
           SQT +G   Y  +IDK++ +   L  S GKV  +  +
Sbjct: 797 SQTTHGYDIYASSIDKENILFLDL--STGKVEMITGV 831


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/23 (26%), Positives = 10/23 (43%)
 Frame = +2

Query: 590 IWFKIRTAEIHWLNERIHPWRPW 658
           IW  +    +H+ +   H   PW
Sbjct: 327 IWITVCVLNVHFRSPSTHNMSPW 349


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 245 NNDRQETNRSHDCATSQGTGSSQLSFNSQHFCN 147
           NN+    N +       G G+S  + N   FC+
Sbjct: 243 NNNNNNNNNNGANDNGNGNGASNNNNNGDMFCH 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,194
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)