Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6SUA9 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_A7D1V5 Cluster: ATP-binding region, ATPase domain prote...    34   4.1  
UniRef50_Q0DC95 Cluster: Os06g0468400 protein; n=4; Oryza sativa...    33   7.2  
UniRef50_Q0RE24 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A6SUA9 Cluster: Putative uncharacterized protein; n=1;
           Janthinobacterium sp. Marseille|Rep: Putative
           uncharacterized protein - Janthinobacterium sp. (strain
           Marseille) (Minibacterium massiliensis)
          Length = 130

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 613 SKEGH-AYLVGCLRVRDYHIWMGRMGWVDGRDAPKWT 720
           SKE H A L+GC  V +++   G + W +GR  PKWT
Sbjct: 14  SKERHLAQLLGCHNVEEFYENAGSL-WDNGRQIPKWT 49


>UniRef50_A7D1V5 Cluster: ATP-binding region, ATPase domain protein;
           n=1; Halorubrum lacusprofundi ATCC 49239|Rep:
           ATP-binding region, ATPase domain protein - Halorubrum
           lacusprofundi ATCC 49239
          Length = 559

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 628 AYLVGCLRVRDYHIWMGRMGWVDGRDAPKWT 720
           AYL  CL      +W+GR+ WVD RD P  T
Sbjct: 11  AYLAACLLAGVIGVWLGRVAWVD-RDEPGGT 40


>UniRef50_Q0DC95 Cluster: Os06g0468400 protein; n=4; Oryza
           sativa|Rep: Os06g0468400 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 548

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 352 SQEXLPPANSTVECILIKLCVHTYFFA-KHIITILHSIKQIRFLC 221
           S + LPP +S+V C     CVH Y  A +H   ++  I    F+C
Sbjct: 269 SLDNLPPEDSSVTCRCCNRCVHPYCIAGEHRAALIQPIDVENFIC 313


>UniRef50_Q0RE24 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 646

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 671 GWDGWDGLMGEMHQNGRD 724
           GWDGWDG  G  +++GRD
Sbjct: 493 GWDGWDGKNGRDNKDGRD 510


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,251,799
Number of Sequences: 1657284
Number of extensions: 13906312
Number of successful extensions: 27329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27323
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)