Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   2.7  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    27   2.7  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   6.3  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 638 WDA*ELEITIFGWDGWDGLMGEMH 709
           W A EL   IFG++GW   + ++H
Sbjct: 51  WKAIELANEIFGFNGWSSSIQDIH 74


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 716 HFGASLPSTHPIRPIQIW*SLTLRHPTR*A*PSFDVN*KLCF*ILFEIDYKENIKL 549
           HF    P  +P +P       T+   TR   P+FD    +C  IL +  +K +IKL
Sbjct: 57  HFSLKFPLDYPFQPP------TIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKL 106


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 113  LLYIQNFLFN---HSIYLKKPHQNPLRSFKYLSIHREVGTEKANLFYTM*YSDNVLCKEI 283
            LL + N  FN   H +YL         SF Y S   E+ T   N F       N +CK+I
Sbjct: 1006 LLPLSNCDFNEQKHELYLS---WRTNASFFYASSSLEIDTPCFNDFKKKFLDSNGMCKQI 1062

Query: 284  C 286
            C
Sbjct: 1063 C 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,093
Number of Sequences: 5004
Number of extensions: 61223
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)