Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       33   0.23 
04_02_0011 - 8513471-8513673,8513815-8513869                           29   3.8  
02_04_0183 - 20723298-20724290                                         28   8.7  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 352 SQEXLPPANSTVECILIKLCVHTYFFA-KHIITILHSIKQIRFLC 221
           S + LPP +S+V C     CVH Y  A +H   ++  I    F+C
Sbjct: 182 SLDNLPPEDSSVTCRCCNRCVHPYCIAGEHRAALIQPIDVENFIC 226


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 464 CLKVVGGIYVTESCYEVHVTESLNICLETILYSLCN 571
           CL + G +  TE C+   +TE    C++    ++C+
Sbjct: 17  CLDISGKVSATEECHAAPITEVPKPCVDATCKAICS 52


>02_04_0183 - 20723298-20724290
          Length = 330

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 485 IYVTESCYEVHVTESLNICLETILYSLCNLFRIVF 589
           I V E+  E H T +LN   ET++ +LC+++ + F
Sbjct: 270 IKVLEAALEGHPTAALN---ETVVVNLCSMYELAF 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,932
Number of Sequences: 37544
Number of extensions: 387979
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)