Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   34   0.13 
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      31   1.3  
SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            28   6.7  
SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)                   28   8.9  
SB_28371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 663 VISNSQASHQ-VSMTFLRCQLKAVLLNTIRNRLQREYKIVSKQMLRDSVTCTS*HDSVT* 487
           + S SQ  H  V++T           NTI +R Q ++  V+ Q   D VT    HD VT 
Sbjct: 318 ITSRSQHQHDHVTVTAPTRSSHGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQHDHVTV 377

Query: 486 MPPTTLRH 463
             PT  RH
Sbjct: 378 TAPTRSRH 385


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 89  DFSTI*WMLLYIQNFLFNHSIYLKKPHQN-PLRSFKYLSIHREVGTEKANLFYTM*YS 259
           D +++  +LL +  F  N S+Y+  PH+  PLR   Y  IHRE  T+     YT+ +S
Sbjct: 632 DDNSVMLLLLIMIFFTDNCSMYIS-PHRGAPLRRITYREIHRENATDNG---YTLGFS 685


>SB_58403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 627 MTFLRCQLKAVLLNTIRNRLQREYKIVSKQMLR 529
           + F+RC +KAVL      R  RE ++  K  +R
Sbjct: 2   LAFMRCHMKAVLPPRAEGRRSREIEVCKKYYIR 34


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 349 QEXLPPANSTVECILIKLCVHT--YFFAKHIITILHSIKQI 233
           QE L PA+ TVEC   +  +HT  Y F+  +I +   + Q+
Sbjct: 224 QELLGPADQTVECTGAESSIHTGIYKFSNTVILLSLLLDQV 264


>SB_35670| Best HMM Match : ubiquitin (HMM E-Value=2)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 427 GSRFNYTETLELMSQGSWRHLRYRVMLRSTCYRIPQH 537
           G  + +    EL+    +RH RY  +++   YR P+H
Sbjct: 177 GKLYRHPRYTELIKGKLYRHPRYTELIKGKLYRHPRH 213


>SB_28371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 427 GSRFNYTETLELMSQGSWRHLRYRVMLRSTCYRI 528
           G+R    +   + +Q SW  +R+R++LRS   R+
Sbjct: 33  GNRRIRVDDSRIRNQKSWEFIRFRILLRSHAMRL 66


>SB_20553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 228 KRICFILCSIVIMCFAK 278
           + I ++LCS+++MCFA+
Sbjct: 112 RTIAYMLCSVLVMCFAR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,742,136
Number of Sequences: 59808
Number of extensions: 461543
Number of successful extensions: 840
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)