Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0299
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   5.9  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.9  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.9  
M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein ( C.ele...    28   7.8  
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    28   7.8  

>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MLLYIQNFLFNHSIYLKKPHQNPLRSFKYLSI 205
           +L YI N  FNH IYL++  Q  ++  + LSI
Sbjct: 317 ILHYIDNETFNHLIYLQRLLQQCMKHCRELSI 348


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MLLYIQNFLFNHSIYLKKPHQNPLRSFKYLSI 205
           +L YI N  FNH IYL++  Q  ++  + LSI
Sbjct: 317 ILHYIDNETFNHLIYLQRLLQQCMKHCRELSI 348


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MLLYIQNFLFNHSIYLKKPHQNPLRSFKYLSI 205
           +L YI N  FNH IYL++  Q  ++  + LSI
Sbjct: 317 ILHYIDNETFNHLIYLQRLLQQCMKHCRELSI 348


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MLLYIQNFLFNHSIYLKKPHQNPLRSFKYLSI 205
           +L YI N  FNH IYL++  Q  ++  + LSI
Sbjct: 317 ILHYIDNETFNHLIYLQRLLQQCMKHCRELSI 348


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 110 MLLYIQNFLFNHSIYLKKPHQNPLRSFKYLSI 205
           +L YI N  FNH IYL++  Q  ++  + LSI
Sbjct: 317 ILHYIDNETFNHLIYLQRLLQQCMKHCRELSI 348


>M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 4 gene, 3' end. ).
          Length = 288

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 718 SILVHLSHQPIPSVPSKYGNL*LSGIPPGKHDLPSMSI 605
           SI+++   +P+     K GN  ++GIPP    +P + +
Sbjct: 95  SIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEV 132


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 718 SILVHLSHQPIPSVPSKYGNL*LSGIPPGKHDLPSMSI 605
           SI+++   +P+     K GN  ++GIPP    +P + +
Sbjct: 464 SIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEV 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,896,922
Number of Sequences: 27780
Number of extensions: 349948
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)